Simply create the shape as a board outline, if you look at the properties you will see that you can have the hole plated or not. Plated holes are routed before the holes are plated through, unplated holes are routed after plating.
Visually the board outline within the copper pad does not "over ride" the filled copper pad so you must pay close attention to it. (The drill/route table is correct)
As a future update could EASY PC be changed so that the non round hole (board outline) in a pad be shown when viewing the copper layers?